rs30925542 SNP Detail

Summary

• ID
  rs30925542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135766321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCCACT TGAGCAGGGC
  TCCTCCCCAC AGTCTCGGTC CTACTTCAGC GGAGGGAGCA ATGTGAGGAG TTGCTTTGCT
  TGTTTCCAGC TGAGCAGGCC TGGACCAGCC CCAAGTCGCA GTGAGTTCTG AGTCTGAGGC
  AGTCTCTACT TAGAGCATCT GGGAACTCCC TGCTTCCTGG ATACCTGTCC GTGTCAAGGG
  Y
  GGCCTCGTGC TGCCCATCAG TGTAACTAGC AGTGTGTTGC ATCTCATGGA TGTCTGTAGA
  TGTGTACCTG GGGTCTCAGC CCTCTTCTCT GCATTAGGAT ATATGTGGGA AACTGGAAAA
  GACAAGGGCA GGACCATCCA TATCCCAGCC TTCTGTACTG GAAATGTGGG TCAGACTACA
  GGGGATGGCT TCAGTGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683402	NES12973054	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30925542					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683402	NES12973054	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135766321 () rs orientation: forward

Symbol	Name	Function Class
Rr419295	regulatory region 419295	1851 bp distal
Rr419296	regulatory region 419296	998 bp distal
Rr419297	regulatory region 419297	within coordinates
Tnnt2	troponin T2, cardiac	Intron
Tssr9006	transcription start site region 9006	160 bp downstream
Tssr9007	transcription start site region 9007	324 bp upstream