rs30925688 SNP Detail

Summary

• ID
  rs30925688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGTAGTTT CCAAGAGACA GATGAGCTAA CACGTAAAAC
  ATAAAAAGAG TGTGCTGCAC AGATGTTGGG TGGTTTGCTT GTGGCCAGTC AGTTCCTCAC
  R
  CCTACTAGAT ATCTCCCTTT CAAGGCTGAG CTCTGATTGA TTTCTTTCTA CCTTTTTTTT
  TTTTTTTTTT TTTTTGAGAC AGGGTCTCAC TGTATAGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss49683307	NES12972943	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G
ss145548347	ENSMUSSNP6166838	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs30925688					SNP	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683307	NES12972943	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777610 () rs orientation: forward

Symbol	Name	Function Class
Rr419305	regulatory region 419305	1663 bp distal
Rr419306	regulatory region 419306	1015 bp proximal
Tnnt2	troponin T2, cardiac	Intron
Tssr226	transcription start site region 226	1862 bp upstream
Tssr227	transcription start site region 227	427 bp upstream
Tssr9016	transcription start site region 9016	1884 bp downstream
Tssr9017	transcription start site region 9017	1846 bp downstream
Tssr9018	transcription start site region 9018	1828 bp downstream
Tssr9019	transcription start site region 9019	1795 bp downstream
Tssr9020	transcription start site region 9020	1024 bp downstream
Tssr9021	transcription start site region 9021	1004 bp downstream
Tssr9022	transcription start site region 9022	516 bp downstream
Tssr9023	transcription start site region 9023	442 bp downstream
Tssr9024	transcription start site region 9024	406 bp downstream
Tssr9025	transcription start site region 9025	116 bp downstream
Tssr9026	transcription start site region 9026	75 bp upstream
Tssr9027	transcription start site region 9027	185 bp upstream
Tssr9028	transcription start site region 9028	225 bp upstream
Tssr9029	transcription start site region 9029	805 bp upstream
Tssr9030	transcription start site region 9030	840 bp upstream
Tssr9031	transcription start site region 9031	899 bp upstream
Tssr9032	transcription start site region 9032	1482 bp upstream
Tssr13891	transcription start site region 13891	1852 bp upstream
Tssr13892	transcription start site region 13892	1785 bp upstream
Tssr13893	transcription start site region 13893	1768 bp upstream
Tssr13894	transcription start site region 13894	1019 bp upstream
Tssr13895	transcription start site region 13895	975 bp upstream
Tssr13896	transcription start site region 13896	448 bp upstream
Tssr13897	transcription start site region 13897	420 bp upstream
Tssr13898	transcription start site region 13898	865 bp downstream
Tssr13899	transcription start site region 13899	933 bp downstream
Tssr13900	transcription start site region 13900	943 bp downstream
Tssr13901	transcription start site region 13901	1504 bp downstream