rs30925689 SNP Detail

Summary

• ID
  rs30925689
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGGCTT CAGTAGGAGG
  GCTCTGCTGT GTGTGACAGT TAGAACACTA ATATGTCTCC AAATTCTGGC TCCCCAAAGG
  GACAACTGGG AGAATCTTGG GTCCTGGAGT CCATGCTCTG GTCTGCAATA ACCTCCTTTT
  TTTTCATGTG GCCTGGTACT GCTTGCCCTG TAGTTTCCAA GAGACAGATG AGCTAACACG
  W
  AAAACATAAA AAGAGTGTGC TGCACAGATG TTGGGTGGTT TGCTTGTGGC CAGTCAGTTC
  CTCACGCCTA CTAGATATCT CCCTTTCAAG GCTGAGCTCT GATTGATTTC TTTCTACCTT
  TTTTTTTTTT TTTTTTTTTT TGAGACAGGG TCTCACTGTA TAGCCCTGGC TGTCCTGGAA
  CTCACTATGT AGATGAGACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ
ss49683308	NES12972942	PERLEGEN	MM_PANEL2	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ
rs30925689					SNP	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683308	NES12972942	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777544 () rs orientation: forward

Symbol	Name	Function Class
Rr419305	regulatory region 419305	1597 bp distal
Rr419306	regulatory region 419306	1081 bp proximal
Tnnt2	troponin T2, cardiac	Intron
Tssr226	transcription start site region 226	1796 bp upstream
Tssr227	transcription start site region 227	361 bp upstream
Tssr9016	transcription start site region 9016	1818 bp downstream
Tssr9017	transcription start site region 9017	1780 bp downstream
Tssr9018	transcription start site region 9018	1762 bp downstream
Tssr9019	transcription start site region 9019	1729 bp downstream
Tssr9020	transcription start site region 9020	958 bp downstream
Tssr9021	transcription start site region 9021	938 bp downstream
Tssr9022	transcription start site region 9022	450 bp downstream
Tssr9023	transcription start site region 9023	376 bp downstream
Tssr9024	transcription start site region 9024	340 bp downstream
Tssr9025	transcription start site region 9025	50 bp downstream
Tssr9026	transcription start site region 9026	141 bp upstream
Tssr9027	transcription start site region 9027	251 bp upstream
Tssr9028	transcription start site region 9028	291 bp upstream
Tssr9029	transcription start site region 9029	871 bp upstream
Tssr9030	transcription start site region 9030	906 bp upstream
Tssr9031	transcription start site region 9031	965 bp upstream
Tssr9032	transcription start site region 9032	1548 bp upstream
Tssr13891	transcription start site region 13891	1786 bp upstream
Tssr13892	transcription start site region 13892	1719 bp upstream
Tssr13893	transcription start site region 13893	1702 bp upstream
Tssr13894	transcription start site region 13894	953 bp upstream
Tssr13895	transcription start site region 13895	909 bp upstream
Tssr13896	transcription start site region 13896	382 bp upstream
Tssr13897	transcription start site region 13897	354 bp upstream
Tssr13898	transcription start site region 13898	931 bp downstream
Tssr13899	transcription start site region 13899	999 bp downstream
Tssr13900	transcription start site region 13900	1009 bp downstream
Tssr13901	transcription start site region 13901	1570 bp downstream