rs30925690 SNP Detail

Summary

• ID
  rs30925690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGGCTTC ATTAACTCAT
  TCATACAACA ATTCATCTAT CCATTCAGTA GACTTCAGCA TGCCCATCTT GTGCCAGAAG
  GTACCTCAAA GAGCTCCTCG TCCAGTGGGA AGAGAGCTGA TCTCATTTGT AAGGAATACC
  CTCTTCATCC CCCACCCTTG CCATTGATCT ATTCATTCCA TCTCCATGAC AACAGGAAGA
  R
  AGGGCCCGGC GTGAGGAGGA GGAGAACAGG AGGAAGGCTG AGGATGAGGC CCGGAAGAAG
  AAGGCTCTGT CCAACATGAT GCACTTTGGA GGGTACATCC AGAAGGTAGG TGCAAAGCAG
  CATCGGGCAC CAGGACACCC CAGTGTATCC TCAAGGCCGC CTTTGCTTGG ATCCATGAAG
  AAATTCCCAA CTGCTGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49683309	NES12972941	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30925690					SNP	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683309	NES12972941	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777093 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1493 bp distal
Rr12645	regulatory region 12645	1308 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1615 bp downstream
Tssr226	transcription start site region 226	1345 bp upstream
Tssr227	transcription start site region 227	85 bp downstream
Tssr9015	transcription start site region 9015	1619 bp downstream
Tssr9016	transcription start site region 9016	1367 bp downstream
Tssr9017	transcription start site region 9017	1329 bp downstream
Tssr9018	transcription start site region 9018	1311 bp downstream
Tssr9019	transcription start site region 9019	1278 bp downstream
Tssr9020	transcription start site region 9020	507 bp downstream
Tssr9021	transcription start site region 9021	487 bp downstream
Tssr9022	transcription start site region 9022	within coordinates
Tssr9023	transcription start site region 9023	7 bp upstream
Tssr9024	transcription start site region 9024	101 bp upstream
Tssr9025	transcription start site region 9025	390 bp upstream
Tssr9026	transcription start site region 9026	592 bp upstream
Tssr9027	transcription start site region 9027	702 bp upstream
Tssr9028	transcription start site region 9028	742 bp upstream
Tssr9029	transcription start site region 9029	1322 bp upstream
Tssr9030	transcription start site region 9030	1357 bp upstream
Tssr9031	transcription start site region 9031	1416 bp upstream
Tssr9032	transcription start site region 9032	1999 bp upstream
Tssr13890	transcription start site region 13890	1580 bp upstream
Tssr13891	transcription start site region 13891	1335 bp upstream
Tssr13892	transcription start site region 13892	1268 bp upstream
Tssr13893	transcription start site region 13893	1251 bp upstream
Tssr13894	transcription start site region 13894	502 bp upstream
Tssr13895	transcription start site region 13895	458 bp upstream
Tssr13896	transcription start site region 13896	23 bp downstream
Tssr13897	transcription start site region 13897	94 bp downstream
Tssr13898	transcription start site region 13898	1382 bp downstream
Tssr13899	transcription start site region 13899	1450 bp downstream
Tssr13900	transcription start site region 13900	1460 bp downstream