rs30925769 SNP Detail

Summary

• ID
  rs30925769
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138288053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTTAGGT TTCTAGGTCC
  CCACAGCTCC ATGCCTGGGA CTTCGTGAGA CTCCGTACTT TCTTCCAAAA CTCCTCTGTG
  CACTGGACCC CTCTCCGCAG ACAGCCATTC CTAAGGCATT GGCTCTTCGT CCTTGCAACA
  AAATGAACGT CAGTGCTTGA TGTAGGTTTG ATCTTGTGGC TCAAACTTGG CTCGCATACT
  S
  TGTTGAACTC ACTGACAGTT GGTTGCTGCT CCCTACAGTG GCAGAAAGGA GAAGAAGCAC
  GTAGTAGGCC ACGTGGTTTT TCAGTTTAAA CTTCTGGTTC AGACACAACA ATGGCAATGA
  GTGTATAGTC TTCTAATGTG GAGGTCAATG TCAAAGAGGC TGCTAAGCAT TGCCTTATGT
  GAATAAATCG AGGAATAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46998390	NES10885259	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30925769					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998390	NES10885259	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138288053 () rs orientation: forward

Symbol	Name	Function Class
Gm43726	predicted gene 43726	1731 bp upstream
Gm66723	predicted gene, 66723	within coordinates
Rr586166	regulatory region 586166	1110 bp proximal