rs30926436 SNP Detail

Summary

• ID
  rs30926436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135766027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCACTTC CAGATCGTTC
  CCCTCATCCC CATCCCAGGC AATGGTCTCC TCCTCACAGG TCCTGATAGC TCCCCCTGGG
  GTCTGGACAA GGTGAGTCTA CACTACCAGA CTCCTGGACT CAGGAGTGGC CGTGCTCATC
  CCGAGGTCTA CGTGGAGGTC ATTTGGTATC CAAATCTTCT CACTAGAACA CAGCTCCACC
  Y
  ACTGTTAAGA CACCTCACAC GTTTGGTTTT TCACTATCTA AATGTGGGGA CGGTGGCAGG
  TCAGGGTGAC ATGTTGCGTG GGGCTGCTGT CCGGGGTTCC ACTTGAGCAG GGCTCCTCCC
  CACAGTCTCG GTCCTACTTC AGCGGAGGGA GCAATGTGAG GAGTTGCTTT GCTTGTTTCC
  AGCTGAGCAG GCCTGGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683406	NES12973050	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30926436					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683406	NES12973050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135766027 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1866 bp distal
Rr419295	regulatory region 419295	1557 bp distal
Rr419296	regulatory region 419296	704 bp distal
Rr419297	regulatory region 419297	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	1893 bp downstream
Tssr9006	transcription start site region 9006	121 bp upstream
Tssr9007	transcription start site region 9007	618 bp upstream