rs30926437 SNP Detail

Summary

• ID
  rs30926437
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135765968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCACACACC TCCCACTTCC AGATCGTTCC
  CCTCATCCCC ATCCCAGGCA ATGGTCTCCT CCTCACAGGT CCTGATAGCT CCCCCTGGGG
  TCTGGACAAG GTGAGTCTAC ACTACCAGAC TCCTGGACTC AGGAGTGGCC GTGCTCATCC
  Y
  GAGGTCTACG TGGAGGTCAT TTGGTATCCA AATCTTCTCA CTAGAACACA GCTCCACCCA
  CTGTTAAGAC ACCTCACACG TTTGGTTTTT CACTATCTAA ATGTGGGGAC GGTGGCAGGT
  CAGGGTGACA TGTTGCGTGG GGCTGCTGTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49683407	NES12973049	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	C	T	C	T		T	C	T	T		C
ss145548051	ENSMUSSNP3131861	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss319993845	CHEV_1_137734807	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30926437					SNP	T	T	C	T	C	C	C	C	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683407	NES12973049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135765968 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1807 bp distal
Rr419295	regulatory region 419295	1498 bp distal
Rr419296	regulatory region 419296	645 bp distal
Rr419297	regulatory region 419297	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	1834 bp downstream
Tssr9006	transcription start site region 9006	180 bp upstream
Tssr9007	transcription start site region 9007	677 bp upstream