rs30926439 SNP Detail

Summary

• ID
  rs30926439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135765898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCCCACTT CTTCTCATCT GCCCCAGTGA
  TTGTAAGCTT GTGGGAGGGC AGGAGAGAAG CCCTGGGGCA GCCACACACC TCCCACTTCC
  AGATCGTTCC CCTCATCCCC ATCCCAGGCA ATGGTCTCCT CCTCACAGGT CCTGATAGCT
  Y
  CCCCTGGGGT CTGGACAAGG TGAGTCTACA CTACCAGACT CCTGGACTCA GGAGTGGCCG
  TGCTCATCCC GAGGTCTACG TGGAGGTCAT TTGGTATCCA AATCTTCTCA CTAGAACACA
  GCTCCACCCA CTGTTAAGAC ACCTCACACG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49683409	NES12973047	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	C	T	C	T		C	C	T	C		C
ss145548046	ENSMUSSNP7015184	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss319993844	CHEV_1_137734737	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30926439					SNP	T	T	C	T	C	C	C	C	T	C	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683409	NES12973047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135765898 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1737 bp distal
Rr419295	regulatory region 419295	1428 bp distal
Rr419296	regulatory region 419296	575 bp distal
Rr419297	regulatory region 419297	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	1764 bp downstream
Tssr9006	transcription start site region 9006	250 bp upstream
Tssr9007	transcription start site region 9007	747 bp upstream