rs30926887 SNP Detail

Summary

• ID
  rs30926887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117113278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCAATATA CAAACATTTC CCCCAGACAC ACCATTTTAG
  CGGAAAGAAA AGACAACCTG TGCATTGAAA ATGATTTAAT GCCATTTGTA CTTTTTCACT
  R
  TGAGATTAGA TTTGCTCCTG TGGTTATTTG CTGATACAGG CTCATCTGTC TCAGAGTTAG
  TGTGAATGAA GGAACTTAAG AAAGATCAGG ACAGGCACAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47997467	NES11997376	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30926887					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47997467	NES11997376	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117113278 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	168 bp downstream
Rr439488	regulatory region 439488	1475 bp distal
Tssr95904	transcription start site region 95904	33 bp downstream
Tssr95905	transcription start site region 95905	12 bp upstream
Tssr95906	transcription start site region 95906	74 bp upstream
Tssr95907	transcription start site region 95907	91 bp upstream
Tssr95908	transcription start site region 95908	267 bp upstream
Tssr95909	transcription start site region 95909	343 bp upstream
Tssr95910	transcription start site region 95910	478 bp upstream
Tssr95911	transcription start site region 95911	608 bp upstream
Tssr95912	transcription start site region 95912	703 bp upstream
Tssr95913	transcription start site region 95913	763 bp upstream
Tssr99410	transcription start site region 99410	57 bp downstream
Tssr99411	transcription start site region 99411	109 bp downstream
Tssr99412	transcription start site region 99412	230 bp downstream
Tssr99413	transcription start site region 99413	291 bp downstream
Tssr99414	transcription start site region 99414	380 bp downstream
Tssr99415	transcription start site region 99415	463 bp downstream
Tssr99416	transcription start site region 99416	513 bp downstream
Tssr99417	transcription start site region 99417	625 bp downstream
Tssr99418	transcription start site region 99418	639 bp downstream
Tssr99419	transcription start site region 99419	654 bp downstream
Tssr99420	transcription start site region 99420	726 bp downstream
Tssr99421	transcription start site region 99421	800 bp downstream
Tssr99422	transcription start site region 99422	1532 bp downstream