rs30926889 SNP Detail

Summary

• ID
  rs30926889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117113340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC TCATCTGTCT CAGAGTTAGT
  R
  TGAATGAAGG AACTTAAGAA AGATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47997469	NES11997377	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30926889					SNP	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47997469	NES11997377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117113340 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	106 bp downstream
Rr439488	regulatory region 439488	1537 bp distal
Tssr95904	transcription start site region 95904	95 bp downstream
Tssr95905	transcription start site region 95905	27 bp downstream
Tssr95906	transcription start site region 95906	12 bp upstream
Tssr95907	transcription start site region 95907	29 bp upstream
Tssr95908	transcription start site region 95908	205 bp upstream
Tssr95909	transcription start site region 95909	281 bp upstream
Tssr95910	transcription start site region 95910	416 bp upstream
Tssr95911	transcription start site region 95911	546 bp upstream
Tssr95912	transcription start site region 95912	641 bp upstream
Tssr95913	transcription start site region 95913	701 bp upstream
Tssr99410	transcription start site region 99410	within coordinates
Tssr99411	transcription start site region 99411	47 bp downstream
Tssr99412	transcription start site region 99412	168 bp downstream
Tssr99413	transcription start site region 99413	229 bp downstream
Tssr99414	transcription start site region 99414	318 bp downstream
Tssr99415	transcription start site region 99415	401 bp downstream
Tssr99416	transcription start site region 99416	451 bp downstream
Tssr99417	transcription start site region 99417	563 bp downstream
Tssr99418	transcription start site region 99418	577 bp downstream
Tssr99419	transcription start site region 99419	592 bp downstream
Tssr99420	transcription start site region 99420	664 bp downstream
Tssr99421	transcription start site region 99421	738 bp downstream
Tssr99422	transcription start site region 99422	1470 bp downstream