rs30927809 SNP Detail

Summary

• ID
  rs30927809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117113563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGGACAG GCACAGCTCA
  CTAGTCGCTC CTGAATGCCT CGTGACACTG GGAACATCCT CTCAAGGGTT AAACAGACTG
  ACACATGAGC TGAGAATTTA TTTTTTAAGC AAGATGAAAG GGGCAGCTCT AAGAAAGACA
  GGTCACGGGT TCCCTGATAA GTTTCTGAGT TCAGACAATC TCAGTTCTCA TCCACTGAGA
  Y
  TCCTGTGCCC TCAGAAACCT TCCCGGCCCA CCACAGAGGC TGTTCTAACT GGGTGCTGGG
  ACTGCACAAA GCCCTGCAGC TCACACGACT GCTGTTTCCC AAGATCAACT GGTCTCCTAT
  AAGCAGTTCT TGTATTTTTA TTCACACAGG TCTGATTAAG ATGAATTCCA ATGGAACTCA
  ATGTGAATCA CTTCCTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47997479	NES11997385	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30927809					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47997479	NES11997385	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117113563 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	within coordinates
Rr439488	regulatory region 439488	1760 bp distal
Tssr95904	transcription start site region 95904	318 bp downstream
Tssr95905	transcription start site region 95905	250 bp downstream
Tssr95906	transcription start site region 95906	196 bp downstream
Tssr95907	transcription start site region 95907	163 bp downstream
Tssr95908	transcription start site region 95908	within coordinates
Tssr95909	transcription start site region 95909	58 bp upstream
Tssr95910	transcription start site region 95910	193 bp upstream
Tssr95911	transcription start site region 95911	323 bp upstream
Tssr95912	transcription start site region 95912	418 bp upstream
Tssr95913	transcription start site region 95913	478 bp upstream
Tssr99410	transcription start site region 99410	206 bp upstream
Tssr99411	transcription start site region 99411	128 bp upstream
Tssr99412	transcription start site region 99412	22 bp upstream
Tssr99413	transcription start site region 99413	6 bp downstream
Tssr99414	transcription start site region 99414	95 bp downstream
Tssr99415	transcription start site region 99415	178 bp downstream
Tssr99416	transcription start site region 99416	228 bp downstream
Tssr99417	transcription start site region 99417	340 bp downstream
Tssr99418	transcription start site region 99418	354 bp downstream
Tssr99419	transcription start site region 99419	369 bp downstream
Tssr99420	transcription start site region 99420	441 bp downstream
Tssr99421	transcription start site region 99421	515 bp downstream
Tssr99422	transcription start site region 99422	1247 bp downstream