rs30928052 SNP Detail

Summary

• ID
  rs30928052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138344001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTTTCC TAGTCATGAC
  AAGTCAGACA TCCTGATGGA TAAAAAGTAT TCCCCAATAA TAAAAGTACA AAGCCCTATA
  AAGAGCTTTA TAGAAAAAAA TCCAGATGAG CTCTACTGAG GAACGGGGAA GAACTTAATG
  ATTACAAAGA AAGGGCAAGG TGGTTCTGGG TGAAAACTCA TTGTTGAAAG TGTAGGTTGC
  R
  CTCAGGCATG GTGGTACATG TCTGTCATCC CGGCACCGGG GAAACAGAGC CAGTAGGATC
  TTGAGTTTGA GGTTGAACTG GGCTACTTAA CAAATTCCAG TTCAGCCTGA AAATATAAAC
  AAGAATGTAA AGGAAATATC AGTTGTCCCC ACAAAATATG TATGCGTGGC ATAATTACCC
  AGGCTCCTGA CACATTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46998804	NES10883121	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30928052					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998804	NES10883121	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138344001 () rs orientation: forward

Symbol	Name	Function Class
Gm65687	predicted gene, 65687	within coordinates
Rr586170	regulatory region 586170	1182 bp proximal