rs30928605 SNP Detail

Summary

• ID
  rs30928605
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117113737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCAGCTCA CACGACTGCT GTTTCCCAAG ATCAACTGGT
  CTCCTATAAG CAGTTCTTGT ATTTTTATTC ACACAGGTCT GATTAAGATG AATTCCAATG
  K
  AACTCAATGT GAATCACTTC CTGGCTGAAG AACTGACCTA CAGAGGTGTC TGTGTGGTGA
  TCATTGTGTT GGCTGACTGT CACCAGCGTC CAGGGCTGTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47997485	NES11997388	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30928605					SNP	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47997485	NES11997388	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117113737 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	within coordinates
Rr439488	regulatory region 439488	1934 bp distal
Tssr95904	transcription start site region 95904	492 bp downstream
Tssr95905	transcription start site region 95905	424 bp downstream
Tssr95906	transcription start site region 95906	370 bp downstream
Tssr95907	transcription start site region 95907	337 bp downstream
Tssr95908	transcription start site region 95908	156 bp downstream
Tssr95909	transcription start site region 95909	66 bp downstream
Tssr95910	transcription start site region 95910	19 bp upstream
Tssr95911	transcription start site region 95911	149 bp upstream
Tssr95912	transcription start site region 95912	244 bp upstream
Tssr95913	transcription start site region 95913	304 bp upstream
Tssr99410	transcription start site region 99410	380 bp upstream
Tssr99411	transcription start site region 99411	302 bp upstream
Tssr99412	transcription start site region 99412	196 bp upstream
Tssr99413	transcription start site region 99413	143 bp upstream
Tssr99414	transcription start site region 99414	29 bp upstream
Tssr99415	transcription start site region 99415	4 bp downstream
Tssr99416	transcription start site region 99416	54 bp downstream
Tssr99417	transcription start site region 99417	166 bp downstream
Tssr99418	transcription start site region 99418	180 bp downstream
Tssr99419	transcription start site region 99419	195 bp downstream
Tssr99420	transcription start site region 99420	267 bp downstream
Tssr99421	transcription start site region 99421	341 bp downstream
Tssr99422	transcription start site region 99422	1073 bp downstream