rs30928611 SNP Detail

Summary

• ID
  rs30928611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117113825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAATTCCAA TGGAACTCAA TGTGAATCAC TTCCTGGCTG
  AAGAACTGAC CTACAGAGGT GTCTGTGTGG TGATCATTGT GTTGGCTGAC TGTCACCAGC
  R
  TCCAGGGCTG TGCTGACTGA CAAGGGAGAC TTTGCACAAC ACAGCATCAG CTGAAGCTTG
  TGAGGAGGAA GTCTCTGTTT TGCCCTGTTT CTGCTGAAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47997491	NES11997392	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30928611					SNP	A	A	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47997491	NES11997392	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117113825 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	within coordinates
Tssr95904	transcription start site region 95904	580 bp downstream
Tssr95905	transcription start site region 95905	512 bp downstream
Tssr95906	transcription start site region 95906	458 bp downstream
Tssr95907	transcription start site region 95907	425 bp downstream
Tssr95908	transcription start site region 95908	244 bp downstream
Tssr95909	transcription start site region 95909	154 bp downstream
Tssr95910	transcription start site region 95910	8 bp downstream
Tssr95911	transcription start site region 95911	61 bp upstream
Tssr95912	transcription start site region 95912	156 bp upstream
Tssr95913	transcription start site region 95913	216 bp upstream
Tssr99410	transcription start site region 99410	468 bp upstream
Tssr99411	transcription start site region 99411	390 bp upstream
Tssr99412	transcription start site region 99412	284 bp upstream
Tssr99413	transcription start site region 99413	231 bp upstream
Tssr99414	transcription start site region 99414	117 bp upstream
Tssr99415	transcription start site region 99415	57 bp upstream
Tssr99416	transcription start site region 99416	within coordinates
Tssr99417	transcription start site region 99417	78 bp downstream
Tssr99418	transcription start site region 99418	92 bp downstream
Tssr99419	transcription start site region 99419	107 bp downstream
Tssr99420	transcription start site region 99420	179 bp downstream
Tssr99421	transcription start site region 99421	253 bp downstream
Tssr99422	transcription start site region 99422	985 bp downstream