rs30928968 SNP Detail

Summary

• ID
  rs30928968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138345991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA TCAGATAAGT ACACCAAGAC
  Y
  TTGAAAATGT GTGAGTATTA GCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss45481403	mCV23933603	ABI	CRAMUS_MOUSE	f	SNP	T	T	C			C	T
ss46998812	NES10883047	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C		T	C		T
ss135955716	ENSMUSSNP4415064	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				T
ss320980818	CHEV_3_138303194	CHEVERUD	SCREENING_POP	f	SNP									C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs30928968					SNP	T	T	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998812	NES10883047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138345991 () rs orientation: forward

Symbol	Name	Function Class
Gm65687	predicted gene, 65687	1224 bp downstream
Rr586170	regulatory region 586170	787 bp distal
Rr586171	regulatory region 586171	1902 bp proximal
Rr586172	regulatory region 586172	1988 bp proximal