rs30928973 SNP Detail

Summary

• ID
  rs30928973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138346182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAAGACC TTGAAAATGT
  GTGAGTATTA GCAACTGTCT AATGTTCATC ACAGAGGAGG CACTCAGTAA GCACCAACAG
  CTGTGGAATT GGAGTAATGT TTCACTTCAG GCAAGTATCT CCGATTTCAC TTCAAGTGCA
  AAGGTGTCAC AGGATAACAG AAACACGGAG TATAACAGAA TCTATGCTGC CATCCCAGCT
  Y
  AGAAGGGTAT GTAACTGGGC ATGTGTGCAT GTTCAAACAC AACAAAACAA ACCAGAAAGA
  TATGTCCCCT GCATCTTAAG GTAGCTCATG CTGGACAGTG GACTGTAGAT GACCTAAAGG
  TATGTTATTC TTTATAATTT CCTTATTTTT AAAGTGGATA TATAAGGGCT TGAGAGATGG
  CTCATTGGTA AAGAACATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
ss46998818	NES10883053	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
rs30928973					SNP	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998818	NES10883053	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138346182 () rs orientation: forward

Symbol	Name	Function Class
Gm65687	predicted gene, 65687	1415 bp downstream
Rr586170	regulatory region 586170	978 bp distal
Rr586171	regulatory region 586171	1711 bp proximal
Rr586172	regulatory region 586172	1797 bp proximal