rs30929118 SNP Detail

Summary

• ID
  rs30929118
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106862106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGTCCT GGACCAGGCA
  CCACCCTCAG ACAGGTGGGG GAGGTTCACA CCTGCCCGAG GGCCAAAAGG CCCATGGTCA
  ATGGCAGCCC CGCCCCTTGG TCCGACCAAC CCAGGAACAG AGCCACCAAG GACAGAGCTT
  CATACTTGGC CACTCGCAGC AGCCTGAGCT TTGACCCACA CCCCATCGAC CAACTGGCAC
  W
  GAACTGTTTG CTCGTAGAGG GGGGTGGGTG GCACTCTGAA GGCTATCCAG CACGATCCGG
  CCCTTTCCCT TGGCAATTCT GTGACACTTT CCAATCTAAG GCCGACAGAG CAAGGCAACC
  AGATTTTTTT CTACAGCACC CTCCCAGGTG AGCAGTGGGC CTGGAGCCCT TCTGTAACCT
  GGCATCTGTA GGTCTTCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47499428	NES11205694	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30929118					SNP	A	A	A	A	A	A	A	A	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499428	NES11205694	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106862106 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Cpgi20965	CpG island 20965	268 bp proximal
Esrp2	epithelial splicing regulatory protein 2	within coordinates
Rr185913	regulatory region 185913	within coordinates
Tssr79219	transcription start site region 79219	43 bp downstream
Tssr79220	transcription start site region 79220	17 bp downstream
Tssr79221	transcription start site region 79221	within coordinates
Tssr79222	transcription start site region 79222	23 bp upstream
Tssr79223	transcription start site region 79223	67 bp upstream
Tssr79224	transcription start site region 79224	395 bp upstream
Tssr79225	transcription start site region 79225	468 bp upstream
Tssr79226	transcription start site region 79226	1584 bp upstream
Tssr82755	transcription start site region 82755	531 bp upstream
Tssr82756	transcription start site region 82756	514 bp upstream
Tssr82757	transcription start site region 82757	1318 bp downstream
Tssr82758	transcription start site region 82758	1416 bp downstream
Tssr82759	transcription start site region 82759	1894 bp downstream