rs30929497 SNP Detail

Summary

• ID
  rs30929497
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117114116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACCGCGG TCAGACTCCG CAGTTCCGAA TATACTGGGA
  CAGATCTCGG TTTTGACAGT GTGCTCGCCA TGCCACCCTG TGGAGGAAAG AGACATGGGG
  W
  TAAATGGATA AAATCTCTCT CCTGTGTTAC ACACACACTC AGACCTTGTG AGTGTGACAC
  TAATGCAGAT TAGGTTCTTG GCCAAGAGCT GGTGTGACAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47997497	NES11997398	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30929497					SNP	A	A	A	A	T	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47997497	NES11997398	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117114116 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	within coordinates
Tssr95904	transcription start site region 95904	871 bp downstream
Tssr95905	transcription start site region 95905	803 bp downstream
Tssr95906	transcription start site region 95906	749 bp downstream
Tssr95907	transcription start site region 95907	716 bp downstream
Tssr95908	transcription start site region 95908	535 bp downstream
Tssr95909	transcription start site region 95909	445 bp downstream
Tssr95910	transcription start site region 95910	299 bp downstream
Tssr95911	transcription start site region 95911	191 bp downstream
Tssr95912	transcription start site region 95912	120 bp downstream
Tssr95913	transcription start site region 95913	43 bp downstream
Tssr99410	transcription start site region 99410	759 bp upstream
Tssr99411	transcription start site region 99411	681 bp upstream
Tssr99412	transcription start site region 99412	575 bp upstream
Tssr99413	transcription start site region 99413	522 bp upstream
Tssr99414	transcription start site region 99414	408 bp upstream
Tssr99415	transcription start site region 99415	348 bp upstream
Tssr99416	transcription start site region 99416	281 bp upstream
Tssr99417	transcription start site region 99417	206 bp upstream
Tssr99418	transcription start site region 99418	187 bp upstream
Tssr99419	transcription start site region 99419	149 bp upstream
Tssr99420	transcription start site region 99420	91 bp upstream
Tssr99421	transcription start site region 99421	15 bp upstream
Tssr99422	transcription start site region 99422	694 bp downstream