rs30930056 SNP Detail

Summary

• ID
  rs30930056
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106937815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCACGG AACGTCACGC
  TACGCCTCGA CGCCCCACCC ACAGTGGGAG AGGCAAAATG GCCGCGGGAG TGGCGGCGAG
  TGGATCGCTT CCCACAGCGG GTGAGCTGTT GGGCTTGCTG GGGAGGTTGG GCCGTGGCTG
  GGCCTGGGTG CAGTCGGTCT TCCGGCCTCA TTTTTAGGGC TCTGGCGTTG GGGATATTTG
  S
  GTTTCCGGTG TACTTATCTT CCGGGCTGCT CCAGAGTCCA CGTGGAGTGG TTCAAGCACC
  CTGAGCAGGT CTGCCGCAGC GGTCCGCGTG GGTGACTGTC CTTTCTCAGA CTGTCGCCGG
  GCGCAGGACT TGTGTCAGAA GCCTCGCCCC AGTCACTCAC ACCGGGCGGG ACCTCAGTTG
  TATGCAGCGC CCCTAACCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499926	NES11201902	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30930056					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499926	NES11201902	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106937815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20969	CpG island 20969	within coordinates
Prmt7	protein arginine N-methyltransferase 7	within coordinates
Rr669120	regulatory region 669120	399 bp distal
Rr669121	regulatory region 669121	150 bp distal
Rr669122	regulatory region 669122	within coordinates
Slc7a6os	solute carrier family 7, member 6 opposite strand	248 bp upstream
Tssr79236	transcription start site region 79236	1032 bp downstream
Tssr79237	transcription start site region 79237	209 bp downstream
Tssr79238	transcription start site region 79238	172 bp downstream
Tssr79239	transcription start site region 79239	140 bp downstream
Tssr82760	transcription start site region 82760	241 bp upstream