rs30930386 SNP Detail

Summary

• ID
  rs30930386
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117114870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCAGGTC GGATCCAGCC
  AGCCTTCTCT GTAACAGGGA GCACTGAATA TAGGGAATTA CTTCCCAAGT ATCTGTGCAT
  CTGTTATTAT TGGAGACAGC CTCCTGCTTC TCTCACAAAG CCATGCCTGC AGTAACAAAT
  ACTGACCTGA ATTCTCCTCT TAAAGAGAGA ATAACATTAT GGTAGCAATA TTCTGTGCTT
  S
  AAAACAACAT GCTGTAGTCT TTGGTCTTAA AGCAGCTGGG CTCCTTCCAT TGTGACCCCA
  CTTCTCATTT ACAGAGTCCC TGGTGGGTCT GGGATATGCT TCAGTGGTCG TGGGGTTGAG
  CTTGTGAATC TGATCGGGAT CACAGCATCC CAGCCCTGGT GAAAAGTAAC GAAGCCACGA
  GGCAGAGAGG ACTCACTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47997507	NES11997403	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G		G	G	G	G		G
ss323495161	CHEV_10_116716021	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30930386					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47997507	NES11997403	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117114870 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	133 bp downstream
Lyz2	lysozyme 2	within coordinates
Tssr95904	transcription start site region 95904	1625 bp downstream
Tssr95905	transcription start site region 95905	1557 bp downstream
Tssr95906	transcription start site region 95906	1503 bp downstream
Tssr95907	transcription start site region 95907	1470 bp downstream
Tssr95908	transcription start site region 95908	1289 bp downstream
Tssr95909	transcription start site region 95909	1199 bp downstream
Tssr95910	transcription start site region 95910	1053 bp downstream
Tssr95911	transcription start site region 95911	945 bp downstream
Tssr95912	transcription start site region 95912	874 bp downstream
Tssr95913	transcription start site region 95913	797 bp downstream
Tssr95914	transcription start site region 95914	1669 bp upstream
Tssr95915	transcription start site region 95915	1747 bp upstream
Tssr99410	transcription start site region 99410	1513 bp upstream
Tssr99411	transcription start site region 99411	1435 bp upstream
Tssr99412	transcription start site region 99412	1329 bp upstream
Tssr99413	transcription start site region 99413	1276 bp upstream
Tssr99414	transcription start site region 99414	1162 bp upstream
Tssr99415	transcription start site region 99415	1102 bp upstream
Tssr99416	transcription start site region 99416	1035 bp upstream
Tssr99417	transcription start site region 99417	960 bp upstream
Tssr99418	transcription start site region 99418	941 bp upstream
Tssr99419	transcription start site region 99419	903 bp upstream
Tssr99420	transcription start site region 99420	845 bp upstream
Tssr99421	transcription start site region 99421	769 bp upstream
Tssr99422	transcription start site region 99422	47 bp upstream
Tssr99423	transcription start site region 99423	1702 bp downstream
Tssr99424	transcription start site region 99424	1770 bp downstream
Tssr99425	transcription start site region 99425	1815 bp downstream