rs30930909 SNP Detail

Summary

• ID
  rs30930909
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106863602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGGGGCGG CACCTGCGGC CGGGTGTAGT GGGAGCTGCA
  GAGACCCGCC CGCGGTGCCC TTTGGGGCTG GGCGGTGCGG CTGCCTATCC CTGCCTACTC
  S
  GGCGAGTTAC CTGCGGCCCG GAGAGGCCAC GTGATCAGGA CGGCCCAGGG AACCCCGCGG
  GAGGGCCAAA ACCCTGCCCA GGAGGCAAGA GCTCACTTCT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499449	NES11205701	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30930909					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499449	NES11205701	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106863602 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Cpgi20965	CpG island 20965	within coordinates
Cpgi20966	CpG island 20966	1040 bp proximal
Esrp2	epithelial splicing regulatory protein 2	mRNA-UTR
Rr669096	regulatory region 669096	1400 bp distal
Rr669097	regulatory region 669097	178 bp distal
Rr669098	regulatory region 669098	within coordinates
Rr669099	regulatory region 669099	1495 bp proximal
Tssr79219	transcription start site region 79219	1539 bp downstream
Tssr79220	transcription start site region 79220	1513 bp downstream
Tssr79221	transcription start site region 79221	1490 bp downstream
Tssr79222	transcription start site region 79222	1458 bp downstream
Tssr79223	transcription start site region 79223	1400 bp downstream
Tssr79224	transcription start site region 79224	1081 bp downstream
Tssr79225	transcription start site region 79225	1017 bp downstream
Tssr79226	transcription start site region 79226	88 bp upstream
Tssr79227	transcription start site region 79227	1438 bp upstream
Tssr82757	transcription start site region 82757	94 bp upstream
Tssr82758	transcription start site region 82758	69 bp upstream
Tssr82759	transcription start site region 82759	398 bp downstream