rs30930968 SNP Detail

Summary

• ID
  rs30930968
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106938253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTTCGG GATGGCTTTC
  TCAGTTCGTA TTCTGAGCAG TTTGGGAACC ATTCAGTTCA CGACACTCAC CCGGAGAAGC
  GCCAGACGTT TGTGTGCCCG AGGTGGACAT GCTTTTGATT AAAACACTGG AGTGGCCCTC
  AGTGCATTTT TAAGTGTGTT CTTAGTGAAA CCCTAGCGAC ATCACAGATA AGCAAGTGTC
  S
  TTAATCTGTT GCGGAATAAC CACTTCTGCG CTTTTACTGT ATAATGTTAG CTCATTGCTC
  GGCTTACCCT GCCTTCTCAC TTGCCTTCAC TTGAAGGCTG GACCCCGATG GACTTGTGGG
  GCCTTTTTAA TTATGTAGGA ATTTCTGAAA AGTGGCGAAA CTTCCAAACA GCCCTATATA
  TTTACTGTAG GCCCCCCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499938	NES11201906	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30930968					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499938	NES11201906	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106938253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20969	CpG island 20969	36 bp distal
Prmt7	protein arginine N-methyltransferase 7	within coordinates
Rr669120	regulatory region 669120	837 bp distal
Rr669121	regulatory region 669121	588 bp distal
Rr669122	regulatory region 669122	within coordinates
Slc7a6os	solute carrier family 7, member 6 opposite strand	686 bp upstream
Tssr79236	transcription start site region 79236	1470 bp downstream
Tssr79237	transcription start site region 79237	647 bp downstream
Tssr79238	transcription start site region 79238	610 bp downstream
Tssr79239	transcription start site region 79239	578 bp downstream
Tssr82760	transcription start site region 82760	679 bp upstream