rs30931505 SNP Detail

Summary

• ID
  rs30931505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:142593380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGTTGG ATTCATGAGG
  CAATTGGAAA ATCTATTGTG TGTGACGACA TGGAAGCTTC CTCCTAGCTA TCCATGTGAG
  ACCAAGTCAT TTCCTCTCAG CATCCCATTT CCCTCTGGTC TCTAAAAACA TTTACATATT
  TGCTTTTATT TTGAAATCTT AGAAATACAA AAGGACAGTT CTCAATATCC ATAGCCTTTG
  Y
  CTTCAAGGAT AGCCTTTCTA TGTGCCAAAC ATGACAAAAG GTTTGTATAT ATTTAGGTTT
  TAGTATAGTA CCATAGGCTG CTGTTCATAA ATATTTTAAT TGATAAGGCA ACATTAAAAT
  CTAACACAGT TACAAGAAAA TAGTTTTAAA TATCGGGTTT TATTGTCTAA AATGTTTCCA
  AGAGTTTCAT ATCCATCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49686111	NES12984087	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30931505					SNP	T	T	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49686111	NES12984087	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:142593380 () rs orientation: forward

Symbol	Name	Function Class
Rr372162	regulatory region 372162	689 bp upstream