rs30931507 SNP Detail

Summary

• ID
  rs30931507
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:142592663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAATGG GGGTCTCTCA
  AAGCAAACAG AGATGGTAAT AATTCAGCCT TAGAAATATA AAGACTTGAG TTCTGAAATG
  GTGTAAATGG GCAGGCAATT GCACTTTTCT GAAGCACATC TAACAAGAAG GGCTATGTTG
  TGGGCATCAA TTTTAACCTT ATAATATTTA TAGAGAAATG CAGTTACATG GAGGGAAATA
  W
  TAAATCCAGG TTAAATCAAT GAAATTGTGG AGTTTTTTTT TTTCAAGAAA CCCATCTTCA
  CTTAATTAGA CATGAGCAAT CAAGATGTCT ACCATGTAAC CTATTTTGTA AAACATATTT
  TGAATTTCAT GATTATGAAA ATTATCCATT AGTTGAAAAG GATAACTTGG TTTTAATGCA
  AAAGTGGTCA CATTATTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49686113	NES12984085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30931507					SNP	T	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49686113	NES12984085	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:142592663 () rs orientation: forward

Symbol	Name	Function Class
Rr372162	regulatory region 372162	1406 bp upstream