rs30931825 SNP Detail

Summary

• ID
  rs30931825
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106863951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTCTGCAA GGGTCACGCA AGACCCATGG AATTCAACAG
  GAGGCAATCT AGGGACTATA AAAGGTCGCG ACGTCTGGCT TGAGGTTAAT GGAAGTTACA
  M
  AGGGTCAAAA GCCGACAGTG AGCGCTACCA GGTATCCACT GGAAGTCGGT GAGAGAGATC
  CGTTGGGGAA AGGGAGGGAG GTAAAGATCA AGGGTTCTTA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499455	NES11205703	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30931825					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499455	NES11205703	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106863951 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Cpgi20965	CpG island 20965	within coordinates
Cpgi20966	CpG island 20966	691 bp proximal
Esrp2	epithelial splicing regulatory protein 2	345 bp upstream
Rr185913	regulatory region 185913	within coordinates
Tssr79219	transcription start site region 79219	1888 bp downstream
Tssr79220	transcription start site region 79220	1862 bp downstream
Tssr79221	transcription start site region 79221	1839 bp downstream
Tssr79222	transcription start site region 79222	1807 bp downstream
Tssr79223	transcription start site region 79223	1749 bp downstream
Tssr79224	transcription start site region 79224	1430 bp downstream
Tssr79225	transcription start site region 79225	1366 bp downstream
Tssr79226	transcription start site region 79226	245 bp downstream
Tssr79227	transcription start site region 79227	1089 bp upstream
Tssr82757	transcription start site region 82757	443 bp upstream
Tssr82758	transcription start site region 82758	418 bp upstream
Tssr82759	transcription start site region 82759	49 bp downstream