rs30931828 SNP Detail

Summary

• ID
  rs30931828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106864138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGAAGTT ACAAAGGGTC
  AAAAGCCGAC AGTGAGCGCT ACCAGGTATC CACTGGAAGT CGGTGAGAGA GATCCGTTGG
  GGAAAGGGAG GGAGGTAAAG ATCAAGGGTT CTTAGAACTG TGGGCGGTCA CTAGAGATCA
  CAGAGAAGGA CGTGCCCATA CAGGTGTCGG GTCGGCGTAG TGCCGGCAGT GCAAGGCGCA
  M
  GTTACTGTGG ACCTGAAGGC TCAGGCCTTG GTGCCAAGGT AGGAAAATCG TGCTTAAACT
  TTAGAGAGCT GTATCCTAAA TGAAGCCGTG TCTGCTGGTA GAGATCTGGA AGTTCAGCCT
  ACCAACCCCA CTTGGGGTTT GCCTGCTTGT TTTTGTCTCT CTTGGATGAT GATAGAAGTG
  TTATCTGGCT ATTGAAAGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499458	NES11205704	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30931828					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499458	NES11205704	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106864138 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Cpgi20965	CpG island 20965	within coordinates
Cpgi20966	CpG island 20966	504 bp proximal
Esrp2	epithelial splicing regulatory protein 2	532 bp upstream
Rr185913	regulatory region 185913	within coordinates
Tssr79222	transcription start site region 79222	1994 bp downstream
Tssr79223	transcription start site region 79223	1936 bp downstream
Tssr79224	transcription start site region 79224	1617 bp downstream
Tssr79225	transcription start site region 79225	1553 bp downstream
Tssr79226	transcription start site region 79226	432 bp downstream
Tssr79227	transcription start site region 79227	902 bp upstream
Tssr82757	transcription start site region 82757	630 bp upstream
Tssr82758	transcription start site region 82758	605 bp upstream
Tssr82759	transcription start site region 82759	111 bp upstream