rs30933605 SNP Detail

Summary

• ID
  rs30933605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106939518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGCAGCT TGGAGGAGCA GGAAGGAGTT TGGTAACCCA
  CTGAATGCAG CAAGAGGGGA AAGTTCAAGA AGCACCAAGA TTCCTCCCGG CGAGATGACC
  R
  GGTGGATGGG ATGCCCACCC GAGAGGAGGA GGTGTTAAGG TTTGGACACT TCCTGTGATG
  CTAGAGGTCG ACAGAAGCAC GAGTTGTGGA GACACAGAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499965	NES11201840	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30933605					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499965	NES11201840	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106939518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20969	CpG island 20969	1301 bp distal
Prmt7	protein arginine N-methyltransferase 7	Intron
Rr669121	regulatory region 669121	1853 bp distal
Rr669122	regulatory region 669122	1084 bp distal
Slc7a6os	solute carrier family 7, member 6 opposite strand	1951 bp upstream
Tssr79237	transcription start site region 79237	1912 bp downstream
Tssr79238	transcription start site region 79238	1875 bp downstream
Tssr79239	transcription start site region 79239	1843 bp downstream
Tssr82760	transcription start site region 82760	1944 bp upstream