rs30933608 SNP Detail

Summary

• ID
  rs30933608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106939626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAGGAG CAGGAAGGAG
  TTTGGTAACC CACTGAATGC AGCAAGAGGG GAAAGTTCAA GAAGCACCAA GATTCCTCCC
  GGCGAGATGA CCGGGTGGAT GGGATGCCCA CCCGAGAGGA GGAGGTGTTA AGGTTTGGAC
  ACTTCCTGTG ATGCTAGAGG TCGACAGAAG CACGAGTTGT GGAGACACAG AGTTTGCGGG
  Y
  GGAGCTCGGT AAAGGTGAGG TTGAGAGAAG TTGCTGCATC CCAGTGAGAG AGGAGATGGA
  GATGGAGATG GAGCGTAAGA GGATCAGCCG AGGAGACTGA GGAGAGCCAA CAGGAAAGTT
  AGGATGGAAA GAAAAGAGAA GCTCAGGGAA GGGAGGAACG CAGGAAAGGG TCGGGCTGCT
  CAGAAGCCCT GAATGCTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499968	NES11201841	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30933608					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499968	NES11201841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106939626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20969	CpG island 20969	1409 bp distal
Prmt7	protein arginine N-methyltransferase 7	within coordinates
Rr669121	regulatory region 669121	1961 bp distal
Rr669122	regulatory region 669122	1192 bp distal
Tssr79238	transcription start site region 79238	1983 bp downstream
Tssr79239	transcription start site region 79239	1951 bp downstream