rs30933659 SNP Detail

Summary

• ID
  rs30933659
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106864989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTTCACC AGGCGGCCCA
  CCCGGAGCCT GCCTACTCAG CCCCGCTACC ACGATAAGCC TGGAATGTCA AATATTTGTT
  CTAGGAACCC AGTGAAACCT TGAGGTAAAG CCCCTCCCCT CCTCCCTCCC ATTCCGGAGC
  GCGCCTGCGT CAGTCCAGGC TTTCCGGTAA GGACACTCCC TTCCAACTAG TTCCTTCTCG
  M
  CACCCCTGCA ACCCATCGTC CTGACTATTT AAACTTCACA AGGTCTTCGC TACAGGCTCA
  GGTTCAGTGA GGCAGAGTCT TGGCTTCCCT ACCCAGTTAT CCCAGAGCTA CTGGTATCGG
  TTTCTACCCA CAACCTCCGA GCAAGGCTCC CCTTTCAACC TGTAGACCTC GCCTCCCGAT
  TCTCGGGAGA TCTTGCTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499479	NES11205711	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30933659					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499479	NES11205711	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106864989 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Cpgi20965	CpG island 20965	728 bp distal
Cpgi20966	CpG island 20966	within coordinates
Esrp2	epithelial splicing regulatory protein 2	1383 bp upstream
Rr185913	regulatory region 185913	within coordinates
Tssr79226	transcription start site region 79226	1283 bp downstream
Tssr79227	transcription start site region 79227	51 bp upstream
Tssr82757	transcription start site region 82757	1481 bp upstream
Tssr82758	transcription start site region 82758	1456 bp upstream
Tssr82759	transcription start site region 82759	962 bp upstream