rs30933876 SNP Detail

Summary

• ID
  rs30933876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:138904324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC TAGGCAATAG TGTTCAACCA
  Y
  TGAGCAATCT GTCCATCCAT ATAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49685570	NES12982829	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	C	C	C	C	T		C	T	T	C		C
ss145584816	ENSMUSSNP2186748	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320001801	CHEV_1_140873163	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30933876					SNP	T	C	T	T	C	C	C	C	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49685570	NES12982829	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138904324 () rs orientation: forward

Symbol	Name	Function Class
4930596I21Rik	RIKEN cDNA 4930596I21 gene	1071 bp upstream
Dennd1b	DENN domain containing 1B	Intron
Gm71084	predicted gene, 71084	within coordinates
Rr396346	regulatory region 396346	268 bp downstream
Rr419797	regulatory region 419797	205 bp distal