rs30934595 SNP Detail

Summary

• ID
  rs30934595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106865270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCCCT ACCCAGTTAT
  CCCAGAGCTA CTGGTATCGG TTTCTACCCA CAACCTCCGA GCAAGGCTCC CCTTTCAACC
  TGTAGACCTC GCCTCCCGAT TCTCGGGAGA TCTTGCTGAC TGTGGAATCC CTGGCTGTTC
  CGAACCCCCT GGAAAGAAGC GGCTGTTCCC AGGTTTCTGC AAGGTAACGA ATCTGAAGAG
  Y
  CAACAGAATT GAGCGGCTCC ATTCATTCGA CTCTGGTTCT CTCAACCAGG CATTCCCCAT
  ATTAAAACAA TTCCAGAACT TCAAAGTCTT TGGTATTTTG CTTTATCACC TTTATTTGTT
  TTTGTGTAGG CACGCACAAG GCACAGTGCC AGGGTGGAGG TCCGAGAACA GCTTGTGGGA
  CTTGGTCCTC TCCTTCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47499485	NES11205713	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30934595					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499485	NES11205713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106865270 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Cpgi20965	CpG island 20965	1009 bp distal
Cpgi20966	CpG island 20966	231 bp distal
Esrp2	epithelial splicing regulatory protein 2	1664 bp upstream
Rr173518	regulatory region 173518	1931 bp proximal
Rr185913	regulatory region 185913	within coordinates
Tssr79226	transcription start site region 79226	1564 bp downstream
Tssr79227	transcription start site region 79227	217 bp downstream
Tssr82757	transcription start site region 82757	1762 bp upstream
Tssr82758	transcription start site region 82758	1737 bp upstream
Tssr82759	transcription start site region 82759	1243 bp upstream