rs30934886 SNP Detail

Summary

• ID
  rs30934886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106860722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTCTGGCT TCGAGAACAA CTGACCTGAG AGGAGATGGC
  ATGGGGGTCA GCAGGGTCTG GTGGAGGAAG TCTCTCCACC AAGCTCAGCA AAAATAGGAC
  Y
  GGTGAGGGCA TTGAGGACGC GGCAGAGGGG TTTCTACCTT GTGTTCTCTT AGAGAAGGTC
  ACAAGTCAGC AAGGGGACTC TGTTGAAGGG ATGGGCACTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47499416	NES11205690	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30934886					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499416	NES11205690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106860722 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	1310 bp upstream
Cpgi20965	CpG island 20965	1652 bp proximal
Esrp2	epithelial splicing regulatory protein 2	within coordinates
Rr669096	regulatory region 669096	892 bp proximal
Tssr79219	transcription start site region 79219	1311 bp upstream
Tssr79220	transcription start site region 79220	1345 bp upstream
Tssr79221	transcription start site region 79221	1374 bp upstream
Tssr79222	transcription start site region 79222	1407 bp upstream
Tssr79223	transcription start site region 79223	1451 bp upstream
Tssr79224	transcription start site region 79224	1779 bp upstream
Tssr79225	transcription start site region 79225	1852 bp upstream
Tssr82755	transcription start site region 82755	843 bp downstream
Tssr82756	transcription start site region 82756	855 bp downstream