rs30935439 SNP Detail

Summary

• ID
  rs30935439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106935826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAACCAC ATGAAGGCTC
  TGGTTTTCCC ATTAGAAAAG GTAGAGACAG CCGCCTTTAA TCCCAGCACT CAGGAGGCAG
  AGGCAGGCGG ATTTCTGACT TTGAGGCCAG CCTGGTCTAC AGAGTGAGCT CCATCTGTAC
  AGCTACAGTG TACTTACATA CATAAAATAA ATAAGGCTTT TTTTTTTAAA GGTTCAACAG
  R
  AGTGAGTATA GACATACAAA ATCTAATAAA AACTATTACT TTGAATAGCC AATGCTTGCT
  AATAAAAACT TTCTGAAAAA AAAAACAAAA TGGCGATAAA AGTATCTAAT TCATAGTATT
  TGTGAAGATT AAGAAAAGGA AAATACCACA TTAGGAATCT AGCTCAGAGG AAGAACACTT
  GCCGCAAGTT CCCTTTGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499902	NES11201950	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30935439					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499902	NES11201950	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106935826 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20969	CpG island 20969			1112 bp proximal
Prmt7	protein arginine N-methyltransferase 7			1860 bp upstream
Rr669119	regulatory region 669119			331 bp distal
Rr669120	regulatory region 669120			1569 bp proximal
Rr669121	regulatory region 669121			1729 bp proximal
Rr669122	regulatory region 669122			1840 bp proximal
Slc7a6os	solute carrier family 7, member 6 opposite strand			Intron
				Noncoding-Transcript-Variant
Tssr79236	transcription start site region 79236			950 bp upstream
Tssr79237	transcription start site region 79237			1766 bp upstream
Tssr79238	transcription start site region 79238			1799 bp upstream
Tssr79239	transcription start site region 79239			1822 bp upstream
Tssr82760	transcription start site region 82760			1730 bp downstream