rs30935669 SNP Detail

Summary

• ID
  rs30935669
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138889895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAATGTG ATTGATACAG
  AGTAAATATA TGGGACATTT TGTCTTCATA CTTAGTATAG CTTGAATAAG TAACAATCTT
  AACTTTATAG AGTAACTGTC ATTTTATATA ATTCCAACAA CGGACATTGA AAACATTTGT
  TACTATTTTC TCACCCCAAA CTAAGAATTC ATGGCACAGT CACCCTAGAC AGGATTGTTT
  W
  CTTTGGAGAA GAATTAATTA TAATGAAAGA AGAAACTCTC ACATTTCAGG AACTCTTGGG
  GCAGAAGTCG TTTTTAGTTA CAGAATTTAT TTCAAGTCTT TCTAGTAAGC TAACTTGTTA
  GTTAGGCAGC AAAAATCTTT ATATGGGAAA ACCATATAAA CATGGTATAG TTGGCCTAAT
  TGTGAAACTG AAATTCACTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49685593	NES12983189	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30935669					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49685593	NES12983189	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138889895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi831	CpG island 831	902 bp proximal
Dennd1b	DENN domain containing 1B	1552 bp upstream
Gm37045	predicted gene, 37045	within coordinates
Rr24805	regulatory region 24805	1860 bp distal
Rr28649	regulatory region 28649	505 bp proximal
Tssr9163	transcription start site region 9163	1982 bp downstream
Tssr9164	transcription start site region 9164	1970 bp downstream
Tssr9165	transcription start site region 9165	1260 bp upstream
Tssr9166	transcription start site region 9166	1472 bp upstream
Tssr9167	transcription start site region 9167	1560 bp upstream