rs30935670 SNP Detail

Summary

• ID
  rs30935670
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138889847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTATTTA TTAAGATCAA
  TAATATCTAA CTCTTTATTG TAGTTGGCCT CAAATGTGAT TGATACAGAG TAAATATATG
  GGACATTTTG TCTTCATACT TAGTATAGCT TGAATAAGTA ACAATCTTAA CTTTATAGAG
  TAACTGTCAT TTTATATAAT TCCAACAACG GACATTGAAA ACATTTGTTA CTATTTTCTC
  W
  CCCCAAACTA AGAATTCATG GCACAGTCAC CCTAGACAGG ATTGTTTACT TTGGAGAAGA
  ATTAATTATA ATGAAAGAAG AAACTCTCAC ATTTCAGGAA CTCTTGGGGC AGAAGTCGTT
  TTTAGTTACA GAATTTATTT CAAGTCTTTC TAGTAAGCTA ACTTGTTAGT TAGGCAGCAA
  AAATCTTTAT ATGGGAAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49685594	NES12983188	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30935670					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49685594	NES12983188	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138889847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi831	CpG island 831	950 bp proximal
Dennd1b	DENN domain containing 1B	1600 bp upstream
Gm37045	predicted gene, 37045	within coordinates
Rr24805	regulatory region 24805	1812 bp distal
Rr28649	regulatory region 28649	553 bp proximal
Tssr9163	transcription start site region 9163	1934 bp downstream
Tssr9164	transcription start site region 9164	1922 bp downstream
Tssr9165	transcription start site region 9165	1308 bp upstream
Tssr9166	transcription start site region 9166	1520 bp upstream
Tssr9167	transcription start site region 9167	1608 bp upstream