rs30935672 SNP Detail

Summary

• ID
  rs30935672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138889772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATGACA GGTTTATTCC
  AACTTCTATC TGCACTAATT TTCGATAAAC TATGTATATA AATCATACCT GCCTGTGTTT
  ATTTATTAAG ATCAATAATA TCTAACTCTT TATTGTAGTT GGCCTCAAAT GTGATTGATA
  CAGAGTAAAT ATATGGGACA TTTTGTCTTC ATACTTAGTA TAGCTTGAAT AAGTAACAAT
  Y
  TTAACTTTAT AGAGTAACTG TCATTTTATA TAATTCCAAC AACGGACATT GAAAACATTT
  GTTACTATTT TCTCACCCCA AACTAAGAAT TCATGGCACA GTCACCCTAG ACAGGATTGT
  TTACTTTGGA GAAGAATTAA TTATAATGAA AGAAGAAACT CTCACATTTC AGGAACTCTT
  GGGGCAGAAG TCGTTTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49685596	NES12983186	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30935672					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49685596	NES12983186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138889772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi831	CpG island 831	1025 bp proximal
Dennd1b	DENN domain containing 1B	1675 bp upstream
Gm37045	predicted gene, 37045	within coordinates
Rr24805	regulatory region 24805	1737 bp distal
Rr28649	regulatory region 28649	628 bp proximal
Tssr9163	transcription start site region 9163	1859 bp downstream
Tssr9164	transcription start site region 9164	1847 bp downstream
Tssr9165	transcription start site region 9165	1383 bp upstream
Tssr9166	transcription start site region 9166	1595 bp upstream
Tssr9167	transcription start site region 9167	1683 bp upstream