rs30935673 SNP Detail

Summary

• ID
  rs30935673
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138889693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTAATG TTGTTTTCTA
  TGAAGCGAAA ATTACCAAAA TTATATCACT GGTTTCAATA AACATAGGTT TACTTCAATA
  AACATGACAG GTTTATTCCA ACTTCTATCT GCACTAATTT TCGATAAACT ATGTATATAA
  ATCATACCTG CCTGTGTTTA TTTATTAAGA TCAATAATAT CTAACTCTTT ATTGTAGTTG
  K
  CCTCAAATGT GATTGATACA GAGTAAATAT ATGGGACATT TTGTCTTCAT ACTTAGTATA
  GCTTGAATAA GTAACAATCT TAACTTTATA GAGTAACTGT CATTTTATAT AATTCCAACA
  ACGGACATTG AAAACATTTG TTACTATTTT CTCACCCCAA ACTAAGAATT CATGGCACAG
  TCACCCTAGA CAGGATTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49685597	NES12983185	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30935673					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49685597	NES12983185	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138889693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi831	CpG island 831	1104 bp proximal
Dennd1b	DENN domain containing 1B	1754 bp upstream
Gm37045	predicted gene, 37045	within coordinates
Rr24804	regulatory region 24804	1965 bp distal
Rr24805	regulatory region 24805	1658 bp distal
Rr28649	regulatory region 28649	707 bp proximal
Tssr9163	transcription start site region 9163	1780 bp downstream
Tssr9164	transcription start site region 9164	1768 bp downstream
Tssr9165	transcription start site region 9165	1462 bp upstream
Tssr9166	transcription start site region 9166	1674 bp upstream
Tssr9167	transcription start site region 9167	1762 bp upstream