rs30936185 SNP Detail

Summary

• ID
  rs30936185
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106936020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAGGAGT GAGTATAGAC
  ATACAAAATC TAATAAAAAC TATTACTTTG AATAGCCAAT GCTTGCTAAT AAAAACTTTC
  TGAAAAAAAA AACAAAATGG CGATAAAAGT ATCTAATTCA TAGTATTTGT GAAGATTAAG
  AAAAGGAAAA TACCACATTA GGAATCTAGC TCAGAGGAAG AACACTTGCC GCAAGTTCCC
  K
  TTGTAGTGAC AAGTCTGGAA TTTTGGTTTC TTTAAAGAAC ACAGAAACAG TTTATTTTTT
  TTTTTGTTTT AATCCCAGGT GTGGGGATGT GGGGCTGCTT TGAGCTGTCT AAAGCAGCTG
  ACTATGATTT GCCTCATGCC CTAGCAGAAG TGGTTTTTGT CAGCTGTAGA TAGTTTCTGT
  GACATTTGGA ATTCTGGGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47499908	NES11201952	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30936185					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499908	NES11201952	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106936020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20969	CpG island 20969	918 bp proximal
Prmt7	protein arginine N-methyltransferase 7	1666 bp upstream
Rr669119	regulatory region 669119	525 bp distal
Rr669120	regulatory region 669120	1375 bp proximal
Rr669121	regulatory region 669121	1535 bp proximal
Rr669122	regulatory region 669122	1646 bp proximal
Slc7a6os	solute carrier family 7, member 6 opposite strand	within coordinates
Tssr79236	transcription start site region 79236	756 bp upstream
Tssr79237	transcription start site region 79237	1572 bp upstream
Tssr79238	transcription start site region 79238	1605 bp upstream
Tssr79239	transcription start site region 79239	1628 bp upstream
Tssr82760	transcription start site region 82760	1536 bp downstream