rs30936188 SNP Detail

Summary

• ID
  rs30936188
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106936371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTTTGT CAGCTGTAGA
  TAGTTTCTGT GACATTTGGA ATTCTGGGAA CTTCTCAGAG GGTATATATA AATGCTAGAG
  CCCCGTCTTC AGGGAGGTTG GAGGCAAATT GTTAGTAGTC TGACCATACA CTGCACCAAA
  ACCTCCAAAA TTGTGAGCTA AAACTCCTTC CATATTTACC TCATTTTTCG TAGCAATGAC
  M
  GTTTAACATC ATCTCTAAAT ACTGTATATC TTTTAAATAG CCAAATCCAC TTTCAAAAGG
  CCTACATCAA TTCTGTTTAT TTATTTTGAT ACACGTTCTC ACTGTGTAGC TCTGCCTGGC
  CTTGAAAGAA GAGATCTATT GATCCATGCC TCTTGAGTAT TAAAGGCCTG ATCAATCACA
  CACAAAGTTT TTGTTTTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499911	NES11201930	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30936188					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499911	NES11201930	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106936371 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20969	CpG island 20969			567 bp proximal
Prmt7	protein arginine N-methyltransferase 7			1315 bp upstream
Rr669119	regulatory region 669119			876 bp distal
Rr669120	regulatory region 669120			1024 bp proximal
Rr669121	regulatory region 669121			1184 bp proximal
Rr669122	regulatory region 669122			1295 bp proximal
Slc7a6os	solute carrier family 7, member 6 opposite strand			Intron
				Noncoding-Transcript-Variant
Tssr79236	transcription start site region 79236			405 bp upstream
Tssr79237	transcription start site region 79237			1221 bp upstream
Tssr79238	transcription start site region 79238			1254 bp upstream
Tssr79239	transcription start site region 79239			1277 bp upstream
Tssr82760	transcription start site region 82760			1185 bp downstream