rs30936894 SNP Detail

Summary

• ID
  rs30936894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10920358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGCTGGG GATCAAGGCA
  AACCCTCTAT CAACTGAGTC ATGACCCAGT CCAGTGTGGC ATTATGAATG AGACTAGAAG
  ATTTATTACT CCCAGAAAGA TTAAAAACAG AAAAGTCAGA GTAACTTCCA GTAGATCCTT
  TCCAAAATTC CTGGGTCACA TGAATTACTA GAGAAAACCG GGGATAGACC AGGAAATGGA
  Y
  CAGCCTTCAA ACTGAAACTC AGGTATAGTG TGCAGTCAAG TCGTCAGGAG GAGACAAAGG
  TTAGGTAGGT AAGGGGCTGT GACCTCATGT GGTGAAGCAA CTCCAGTCCT TAATGATGTT
  CCATTTTGTA ATATTTCACT AAAATACCTT TTCTTATTAA AATTCCCCTT GCATAGCATT
  CCACAAACTG GCACAGGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss49187510	NES12691059	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs30936894					SNP	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187510	NES12691059	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10920358 () rs orientation: forward

Symbol	Name	Function Class
Gm35814	predicted gene, 35814	within coordinates
Gm58912	predicted gene, 58912	within coordinates
Rr533830	regulatory region 533830	1629 bp distal
Rr533831	regulatory region 533831	200 bp proximal
Rr533832	regulatory region 533832	701 bp proximal
Tssr150046	transcription start site region 150046	564 bp upstream
Tssr150047	transcription start site region 150047	683 bp upstream
Tssr150048	transcription start site region 150048	710 bp upstream
Tssr150049	transcription start site region 150049	1595 bp upstream