rs30936896 SNP Detail

Summary

• ID
  rs30936896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10919041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTTCTCT CTCTCTTTGG
  TGACAGGGTC TTATAGACTA GTGTGTCCTC AAAGGAGCTA TGAAATTGAA GATGGCCTTG
  AATTACTGTT TTTTTTTTTT CTTGTAGTGC ATTCAAGTCT GATATAAAGT GACCACTCCT
  CCAAACTCCA GTACAAAATA CTTAGGCAAA AAGACTAAGT GGCTATGAAA TCATCACATG
  R
  TAAATGGAAG TCAACTTGTA CAATTTATGC AAATTATGTC TGGCCTACAA GGCTGTGTGG
  AGCCAAATCC AAGACAGCTG TGTACTAACA ATTCTTTTTT CAAGAGATTT ACTTTTTGAT
  TTTATAATTA TATAATCCCC CCTCTGGTTC TTTGGGCTCT TCCTCCTAGT GCTGGAGATG
  AAAGCATGCA CACTCTACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss49187512	NES12691130	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs30936896					SNP	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187512	NES12691130	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10919041 () rs orientation: forward

Symbol	Name	Function Class
Gm35814	predicted gene, 35814	within coordinates
Gm58912	predicted gene, 58912	within coordinates
Rr533829	regulatory region 533829	1742 bp distal
Rr533830	regulatory region 533830	312 bp distal
Rr533831	regulatory region 533831	1517 bp proximal
Tssr150046	transcription start site region 150046	1881 bp upstream
Tssr150047	transcription start site region 150047	2000 bp upstream