rs30937074 SNP Detail

Summary

• ID
  rs30937074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106936906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGAAA ACCAATCCTA
  AGGGGCGTGG GTTGCACATG CTTACTTATA ATCCCAGCAC TGGAGCGACG GAGGCAGAAC
  TGCTGTGTGT CAGAGGTCTG CTTGGGCTCC ATAGCCCGTA CTATGTCAAC CAGAGCTACA
  CAGCAAAACT ATCTCAACAG AACAAAAACA ACAACAGAAA TCAGGTAAAA TGAGGTCAAC
  Y
  CTTAGAGATG GATCATCCAT TCTTAAGCTT ACAGTGTGTA TGCTCTTCAT TACTGCCTTT
  GGGAGCAGAG CAGACATATA CAGTACTCAC TTTGCGGCAG TCGGTGGCAG CAGCCTCTGG
  GTTTTCCTCC TCGTGGACCA GGTCCAACAA CTGGAAGCCC GCATCCCCGA CAGCTTCTGA
  CCCACACTGA GGCTCCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499917	NES11201899	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30937074					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499917	NES11201899	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106936906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20969	CpG island 20969	32 bp proximal
Prmt7	protein arginine N-methyltransferase 7	780 bp upstream
Rr669119	regulatory region 669119	1411 bp distal
Rr669120	regulatory region 669120	489 bp proximal
Rr669121	regulatory region 669121	649 bp proximal
Rr669122	regulatory region 669122	760 bp proximal
Slc7a6os	solute carrier family 7, member 6 opposite strand	within coordinates
Tssr79236	transcription start site region 79236	123 bp downstream
Tssr79237	transcription start site region 79237	686 bp upstream
Tssr79238	transcription start site region 79238	719 bp upstream
Tssr79239	transcription start site region 79239	742 bp upstream
Tssr82760	transcription start site region 82760	650 bp downstream