rs30937080 SNP Detail

Summary

• ID
  rs30937080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106937366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCGCGCA CCGAGGCACG
  AAGATCGCGG CGGATACGCA GCTGGCTGCT CCGGGACGGG CGCAAGGCAG CCCGCACAAG
  CTGCTGGATT GGCTCCTCCT GAGGGGCGTC GGGAAAAGAG ATGACTGCGA CACGGGCAGC
  GTTCAAAGAT CGCTCCCACA AAGAGTCCAT TCACCCTTCT CATACCTGGG ATCGCACGGT
  R
  GCAACCAACT GGAAGACATT TCTCTCCGCC GCCGCCGCCT CCTGGCCCTC TGGCGTCTCC
  CGAGCCGCCG ACTCGACCTC GCTGCTCCGG GGGCGTTTAC AGGCCAGCAC GAGCGCCTCG
  GCGGGCTCCG CGTTGCGCTT CCGCTTCACG CGCAACACCG CAGTCCTGCC GGCCTCCATA
  GCGGCGATCG CGGAGTACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47499923	NES11201901	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30937080					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47499923	NES11201901	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106937366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20969	CpG island 20969	within coordinates
Prmt7	protein arginine N-methyltransferase 7	320 bp upstream
Rr669119	regulatory region 669119	1871 bp distal
Rr669120	regulatory region 669120	29 bp proximal
Rr669121	regulatory region 669121	189 bp proximal
Rr669122	regulatory region 669122	300 bp proximal
Slc7a6os	solute carrier family 7, member 6 opposite strand	within coordinates
Tssr79236	transcription start site region 79236	583 bp downstream
Tssr79237	transcription start site region 79237	226 bp upstream
Tssr79238	transcription start site region 79238	259 bp upstream
Tssr79239	transcription start site region 79239	282 bp upstream
Tssr82760	transcription start site region 82760	190 bp downstream