rs30938038 SNP Detail

Summary

• ID
  rs30938038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144996395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATC TCACAACGTG GACAGGGAGC
  R
  CTTGAGATGG AACTGCAAAT CAATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss45979530	mCV23990636	ABI	CRAMUS_MOUSE	f	SNP		G				A	A
ss48141296	NES11826296	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A		A	A	A		A
ss133960886	ENSMUSSNP6609703	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss322067449	CHEV_6_144999189	CHEVERUD	SCREENING_POP	f	SNP										A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs30938038					SNP	G	G	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141296	NES11826296	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144996395 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1456 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Tssr2055	transcription start site region 2055	1590 bp upstream
Tssr64038	transcription start site region 64038	1999 bp upstream
Tssr64039	transcription start site region 64039	1982 bp upstream
Tssr64040	transcription start site region 64040	1963 bp upstream
Tssr64041	transcription start site region 64041	1940 bp upstream
Tssr64042	transcription start site region 64042	1922 bp upstream
Tssr64043	transcription start site region 64043	1864 bp upstream
Tssr64044	transcription start site region 64044	1848 bp upstream
Tssr64045	transcription start site region 64045	1816 bp upstream