rs30939079 SNP Detail

Summary

• ID
  rs30939079
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:142593977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTAGTGG TCAGTTCCAC
  GGGAAGCAAT GATAACATGA GAGAGAAATG AGTGAGATGC GTGTACTGTT GCAACATGTT
  AGACCATTCA GATAAAAAAG TTAAGACCAA AAAATGAGTA GGATACTGAA TAATAAAAAG
  TCATGACGTC AGAATTTTAT CTACTGCGTT TATGGGAGCA CAACTGAGCT TTAACAGGTC
  M
  AACATAGGGA ATCAAGCCTT CTACCTAAAC CACATACAAA CAAATAAAGC TTTCAGCACA
  AGAACAACCT GAGTTAGAGT ACAGAGATCT TCTAAACATC CCAAGTTTGT AGATCACTGT
  TATCTCAATA AAAAATAGTA CAAAATTATG ATACGTTAAG ATATGTACAA TGTATGCACT
  ACTCTTGCTG CCTCGGTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49686105	NES12984093	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30939079					SNP	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49686105	NES12984093	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:142593977 () rs orientation: forward

Symbol	Name	Function Class
Rr372162	regulatory region 372162	92 bp upstream