rs30939354 SNP Detail

Summary

• ID
  rs30939354
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133632428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGCTGTTTG GAGAAAGTAA GTATAGTATA TTGGTTGTTG TTTTTAACCA ATTACAAACA
  TACTGAGTCA CCTGTCATGC CAAACAGCTG GTGATGCTCC TCTCCACGGT GTGACATGGT
  GGCACTTTAT TTGAAATTCT TTAAACAATA TATATATATA GAGAGATATA GATATAGATA
  TATGGCTGAC TAATAAATGT CAGTTCCTGA CCTAAAGAAA ACTATATTTT TTTGCATAAT
  ATTTCTATAT TTTCTCTCTT ACTATGGAAA CTACAGAACA CGCATACACA GAAAAACCTG
  K
  TGACTTTGAA AAAGTAGACA CAAGCCCTCA GGAGTTAACC TGTCAGGCAC CACAGAATTG
  TTTGGGAGCA AGGATGGTAA AATGGCCTTC AAAACTTGTT ATTGGCTTAT TTTTTAAAAA
  TAATCTGAGG TAATAAAAGA GTTGACAGAA TCCAATCTTC TAATGTACTT AAATATATAT
  AGTTGAACAA CAACACCTTG AGTGAGATAC CTTTCCCCCC AAAGAGGAAA GATTGCCGAA
  ATGTGTAAGC TTTACAAAAT CCCAATCAAA GCCTTCTCCC TACTTCCTCT AATGATGGAT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44978741	mCV23241313	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30939354					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133632428 () rs orientation: forward

Symbol	Name	Function Class
Atp2b4	ATPase, Ca++ transporting, plasma membrane 4	within coordinates