rs30939639 SNP Detail

Summary

• ID
  rs30939639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89313538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGTGG GGGGTGCAGG
  TTATGTGAGG AGCCAGTAAG AGAAGGATGG GAAGTGAAAG AGGTTGAGTA CAGCCTTCCC
  TATTTGGTAG AAAGCTGTCT ACTCTGACCC CAACTCCTAC CCTGCAGGAT ATTCCTGTCA
  GCCAAGGGCT GCTGGAACCA GGGGCGAGGA CAACTGAAGT CTTGCCAACA ACCCGGTGTA
  Y
  ACAACTCTAA TAATCTGGGC CTAAGCCTGT TCCAAAAAAT TCATTGTCCT CCTGACTATA
  CACTTCCTGG ATGGGGAAAA TGAGGCCTGC CAGTAGTCAG GAGCCAAAGG AGAGCTCAAG
  CCTGAGCTCA GGTGTCCCGT GCACATCCTG GAAGGGTTTG TTCTCTAAAG AACTCTCTGC
  TCTAGGAAAG TCCTCGGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47999929	NES11908735	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30939639					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999929	NES11908735	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89313538 () rs orientation: forward

Symbol	Name	Function Class
Plxna1	plexin A1	within coordinates
Rr141614	regulatory region 141614	663 bp proximal
Rr150842	regulatory region 150842	339 bp distal
Rr150843	regulatory region 150843	1664 bp proximal