rs30939643 SNP Detail

Summary

• ID
  rs30939643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89314399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGATGTGGG TAGAAGGCAG GATCTGTGGG CAGTCCTGAG
  GACAGCAAAG CACTGGCTGA GCTGGGTCTG ATGGCAGCAA GAGGTGCAAG TTCCACTGCA
  R
  CCCAGGCTAT GGGGACTCAC AAAGCCCAGG TTCCCTGTGT CACTCTGAAT GTGGGCACCG
  CAAAGACAGT GGTCTTCAGG TCCTGCTCCA ACCAGGATGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47999933	NES11908737	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30939643					SNP	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999933	NES11908737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89314399 () rs orientation: forward

Symbol	Name	Function Class
Plxna1	plexin A1	within coordinates
Rr141614	regulatory region 141614	within coordinates
Rr150842	regulatory region 150842	1200 bp distal
Rr150843	regulatory region 150843	803 bp proximal