rs30939865 SNP Detail

Summary

• ID
  rs30939865
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87754419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC CAACCATGCC CCCAAGGTAC
  K
  TATAAAGTTT TCTCTCTGCT CCCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45480350	mCV23485236	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	G
ss135468474	ENSMUSSNP6778636	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30939865					SNP	G	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87754419 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367451	regulatory region 367451			within coordinates
Rr579559	regulatory region 579559			97 bp distal
Sh2d2a	SH2 domain containing 2A			Intron
				Splice-Site
Tssr29832	transcription start site region 29832			1813 bp downstream
Tssr29833	transcription start site region 29833			340 bp downstream
Tssr29834	transcription start site region 29834			324 bp downstream
Tssr29835	transcription start site region 29835			258 bp downstream
Tssr29836	transcription start site region 29836			219 bp downstream
Tssr29837	transcription start site region 29837			113 bp downstream
Tssr29838	transcription start site region 29838			45 bp downstream
Tssr29839	transcription start site region 29839			24 bp upstream
Tssr33958	transcription start site region 33958			511 bp upstream
Tssr33959	transcription start site region 33959			311 bp upstream
Tssr33960	transcription start site region 33960			207 bp upstream
Tssr33961	transcription start site region 33961			1993 bp downstream