rs30940261 SNP Detail

Summary

• ID
  rs30940261
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:99537150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCGTGGAG GCTCACCCTA GAATGTATTG TAGGGCCCCG
  TTTGGAAAAC TAGAATCTTA AGGTTGTATT GGAACACCGC TTTTCCCTTA AAAAGAAACA
  S
  GGACAAAAAA GGCCAGGGGT GTTGTTTTTC TTAGTGTGCG CGTAAATTTC CTCTCGGAGT
  CGCGTTGAAA GCTGGCAGTT GGCTTTTACA CTTGCCCAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39237048	mCV25408004	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
ss146719853	ENSMUSSNP1537433	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		G
ss324792945	CHEV_14_99698933	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30940261					SNP	C	C	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:99537150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6800	CpG island 6800	within coordinates
Klf5	Kruppel-like transcription factor 5	within coordinates
Rr291012	regulatory region 291012	1851 bp proximal
Rr297571	regulatory region 297571	within coordinates
Tssr126881	transcription start site region 126881	999 bp downstream
Tssr126882	transcription start site region 126882	725 bp downstream
Tssr126883	transcription start site region 126883	1920 bp upstream
Tssr126884	transcription start site region 126884	1949 bp upstream
Tssr126885	transcription start site region 126885	1974 bp upstream